FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282147

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282147
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1471438
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTCCAA144322198.08235209366619No Hit
TCCTCAAA80590.5476955196209422No Hit
TCCACCAA43320.2944058805060084No Hit
ACCTCCAA34360.23351306680947484No Hit
TCCTCTAA16250.11043618555453916No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)