FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005282162

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282162
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences706513
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTATG69364898.17908516899195No Hit
TGTCTATA27360.3872540208035804No Hit
AGTCTATG13630.19291930934038015No Hit
TGTCAATG13090.1852761378771516No Hit
TGTCTAAG9620.13616168421529398No Hit
TGACTATG9190.13007545508716753No Hit
TGGCTATG7580.10728748090976387No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)