FastQCFastQC Report
Wed 8 May 2024
EGAF00005282179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences944607
Total Bases7.5 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCACGAA92455297.87689483563005No Hit
CCCACGAA36250.383757477977614No Hit
ACCACAAA35830.37931118443966644No Hit
ACCACCAA31040.3286022652806934No Hit
ACAACGAA23570.249521758784341No Hit
ACCCCGAA14560.15413817598218096No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)