FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282185

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282185
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences709144
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGGTGT69859198.51186782938302No Hit
GTGGGTGA20050.28273524136141603TruSeq Adapter, Index 23 (100% over 8bp)
GGGGGTGT12690.17894814029308573No Hit
GAGGGTGT9140.12888778583757318No Hit
GTGGGGGT8780.1238112428505353No Hit
GTGGGAGT7710.10872262897239487No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)