FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282192

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282192
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences731015
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGGTGT72083198.60686853210946No Hit
GTGGGTGA20390.27892724499497273TruSeq Adapter, Index 23 (100% over 8bp)
GGGGGTGT11630.15909386264303743No Hit
GAGGGTGT8740.1195597901547848No Hit
GTGGGGGT8460.11572949939467726No Hit
GTGGGAGT7380.10095552074854824No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)