FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282195

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282195
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences704550
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGGTGT69380998.47548080334965No Hit
GTGGGTGA20270.2877013696685828TruSeq Adapter, Index 23 (100% over 8bp)
GGGGGTGT13350.18948264849904195No Hit
GTGGGGGT10740.15243772620821802No Hit
GAGGGTGT8650.12277340146192606No Hit
GTGGGAGT7520.10673479525938542No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)