FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282204

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282204
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1467288
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGACTTGA143707797.94103134490297No Hit
CGCCTTGA78550.535341391737682No Hit
CGACTTAA36360.24780411207615682No Hit
CGACATGA21130.14400717514216704No Hit
CGACTAGA19990.1362377392849938No Hit
CGACTTGC19110.130240280026825No Hit
CGACCTGA16610.11320204349793633No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)