FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282230

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282230
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1747393
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGCGTG172019398.44339538958894No Hit
ATTGCGTA44060.25214705564231976No Hit
AATGCGTG27350.1565188827012584No Hit
TTTGCGTG19070.1091340070608043No Hit
ATTGCGGG18570.10627260152696046No Hit
ATTTCGTG17590.10066424668062651No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)