FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282246

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282246
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1430794
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGACTTGA140307498.0626141848512No Hit
CGCCTTGA64420.45023951735889306No Hit
CGACTTAA36770.25699017468622315No Hit
CGACATGA20470.1430674157146312No Hit
CGACTAGA18150.12685264265855184No Hit
CGACCTGA16310.11399265023476475No Hit
CGACTTGC16040.11210558612910035No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)