FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282249

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282249
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1462787
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGACTTGA143592698.16371077949148No Hit
CGCCTTGA65030.444562332041507No Hit
CGACTTAA36670.25068584831557844No Hit
CGACATGA19120.1307093924132495No Hit
CGACTAGA18840.1287952381310471No Hit
CGACCTGA17010.11628487264379571No Hit
CGACTTGC15580.10650901327397633No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)