FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282255

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282255
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences806153
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGGTAC79586498.72369140845473No Hit
CTTGGTAA17280.21435137002529295No Hit
CATGGTAC13040.16175589497279053No Hit
CTAGGTAC11620.14414137266747132No Hit
CTTGGAAC10340.1282634934063385No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)