FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005282288

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282288
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences944286
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTTGCA93130598.62531055209968No Hit
TAGTTGCA23010.24367617437937236No Hit
AAGTTGAA20620.21836604588016767No Hit
AAGATGCA11970.1267624427345105No Hit
AAGTAGCA11440.1211497364146032No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)