FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005282358

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282358
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences196353
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGGACAT19413298.86887391585563No Hit
ACGGACAG4700.23936481744613017No Hit
ACGGACAA4660.2373276700636099No Hit
ACGGCCAT2030.10338522966290303No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)