FastQCFastQC Report
Fri 10 May 2024
EGAF00005282365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences211359
Total Bases1.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCTTGA20966399.19757379624241No Hit
GATCTTAA4180.19776777899214132No Hit
GATCTAGA3180.1504549132045477ABI Dynabead EcoP Oligo (100% over 8bp)
GATCTCGA2530.11970155044261185No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)