FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282388

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282388
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences179999
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGATCACC17618897.88276601536676No Hit
CGATCACA12970.7205595586642147No Hit
CGATCCCC7290.40500225001250006No Hit
CGATCGCC2740.15222306790593282No Hit
CGCTCACC2420.13444519136217423No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)