FastQCFastQC Report
Tue 7 May 2024
EGAF00005282426

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282426
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences283857
Total Bases2.2 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCGTCA28194299.32536453214118No Hit
AGGCGTAA3850.13563167369485338No Hit
GGGCGTCA2920.10286869797116155No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)