FastQCFastQC Report
Tue 7 May 2024
EGAF00005282440

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282440
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences224471
Total Bases1.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACTACGT22180398.81142775681491No Hit
GACTACGG5210.23210125138659338No Hit
GACTACGA5100.22720084108860386No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)