FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282446

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282446
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences269936
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAGCAC26611598.58447928397842No Hit
CGGAGCGC4780.17707901132120207No Hit
CGGAGCAA4760.17633809495584138No Hit
CGGCGCAC4590.17004030585027563No Hit
CGGAGCCC4510.1670766403888329No Hit
CGGGGCAC4010.14855373125481597No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)