FastQCFastQC Report
Fri 10 May 2024
EGAF00005282460

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282460
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences183844
Total Bases1.4 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACCTATT18077598.33064989882728No Hit
GACCTATA8890.4835621505189182No Hit
GCCCTATT4940.2687060768912774No Hit
GGCCTATT3380.1838515262940319No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)