FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005282486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences224715
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGCTCG22137298.51233785016576No Hit
TTAGCTCA8080.3595665620897581No Hit
TTAGCGCG4380.1949135571724184No Hit
TTAGCTGG3370.14996773691119863No Hit
TTAGGTCG3130.13928754199764146No Hit
TTTGCTCG2580.11481209532073962No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)