FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005282489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences267635
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAGCAC26399598.63993872251388No Hit
CGGAGCCC5060.18906346329889587No Hit
CGGAGCGC4660.1741177349748725No Hit
CGGAGCAA4540.16963401647766546No Hit
CGGCGCAC4280.15991929306705027No Hit
CGGGGCAC3530.13189605245950642No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)