FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282518

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282518
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences219921
Sequences flagged as poor quality0
Sequence length8
%GC74

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCTGCC21701298.67725228604817No Hit
CACCTGCA6600.3001077659705076No Hit
CACCTGCG5520.2509992224480609No Hit
CCCCTGCC3010.1368673296320042No Hit
CGCCTGCC2210.10049063072648816No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers