FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282521

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282521
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences217219
Sequences flagged as poor quality0
Sequence length8
%GC74

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCTGCC21379298.42232953839213No Hit
CACCTGCA6730.30982556774499465No Hit
CCCCTGCC5610.25826470060169693No Hit
CGCCTGCC5550.2555025112904488No Hit
CACCTGCG2200.1012802747457635No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)