FastQCFastQC Report
Fri 10 May 2024
EGAF00005282588

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282588
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences208597
Total Bases1.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGATTCTA20582898.67256000805381No Hit
TGATTCAA5860.28092446200089166No Hit
TGATTCTG4180.2003863909835712No Hit
TGAATCTA2520.12080710652598071No Hit
TGATTCTT2110.1011519820515156No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)