FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282614

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282614
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences198537
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGCAAT19638098.91355263754363No Hit
GTGGCAAG5270.265441706079975No Hit
GTGGCAAA4000.2014737807058634No Hit
GTGGCATT2040.10275162815999034No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)