FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282640

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282640
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences178688
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AACGTGC100.0072380262143.974265
TCGTTAA100.0072380262143.974266
CTCGTGA151.2635601E-4143.974265
CATATAC202.2022214E-6143.974268
CGAGTTG100.0072380262143.974265
ATAGGCA100.0072380262143.974266
CGAGTAG100.0072380262143.974265
CCGATGT100.0072380262143.974263
CATTGTA151.2635601E-4143.974264
GGCGTAA202.2022214E-6143.974265
ATTGTAT100.0072380262143.974265
TGAGTTA202.2022214E-6143.974265
TGTATAA151.2635601E-4143.974267
ATAGACT100.0072380262143.974269
TAAGTAT100.0072380262143.974265
CGATTGA306.8030204E-10143.974261
AGGCGTA151.2635601E-4143.974264
TTCCGCG151.2635601E-4143.974267
GCCATAC100.0072380262143.974266
ATCGTAG100.0072380262143.974262
Produced by FastQC (version 0.11.5)