FastQCFastQC Report
Fri 10 May 2024
EGAF00005282675

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282675
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences180772
Total Bases1.4 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC74

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGGTGC17861598.80678423649681No Hit
CACGGTGG6190.3424202863275286No Hit
CACGGTGA3970.21961365698227603No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)