FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005282687

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282687
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1597991
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCTCG156878998.17258044632291No Hit
GTCTCTCA53450.3344824845696878No Hit
GTCTCACG34740.2173979703264912No Hit
GTCACTCG21580.1350445653323454RNA PCR Primer, Index 47 (100% over 8bp)
GTCTCGCG21390.13385557240309864No Hit
GACTCTCG20000.12515715044703005No Hit
GTCGCTCG18650.11670904279185551No Hit
GTCTCTCC16490.10319207054357628No Hit
GGCTCTCG16470.10306691339312923No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)