FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005282690

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282690
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1246402
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATCTCTC122495998.27960802373552No Hit
AATCTCTA42090.33769201268932497No Hit
AAACTCTC33550.26917479272337497TruSeq Adapter, Index 19 (100% over 8bp)
AATCACTC29810.23916842238699876No Hit
AATCTCAC22240.17843360328369176No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)