FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282693

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282693
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1253006
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATCTCTC123072698.221876032517No Hit
AATCTCTA43600.3479632180532256No Hit
AAACTCTC36060.2877879275917274TruSeq Adapter, Index 19 (100% over 8bp)
AATCACTC29400.23463574795332184No Hit
AATCTCAC23550.18794802259526291No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)