FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1548774
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCTCG152208998.2770242785584No Hit
GTCTCTCA51300.3312297339702242No Hit
GTCTCACG30760.19860870598292585No Hit
GTCACTCG20210.13049031040035539RNA PCR Primer, Index 47 (100% over 8bp)
GACTCTCG19540.12616430802686512No Hit
GTCTCGCG18770.12119263365733153No Hit
GGCTCTCG16070.10375948976416186No Hit
GTCGCTCG15550.10040199538473657No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)