FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005282700

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282700
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1284510
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATCTCTC126105498.17393402931857No Hit
AATCTCTA45570.3547656304738772No Hit
AAACTCTC37300.29038310328452094TruSeq Adapter, Index 19 (100% over 8bp)
AATCACTC30270.23565406263867153No Hit
AATCTCAC24760.19275832807841123No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)