FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282716

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282716
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences697395
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGAAAT68707498.52006395227956No Hit
TCAGAAAA22280.31947461625047496No Hit
ACAGAAAT14760.21164476372787303No Hit
TCACAAAT8920.12790455910925658No Hit
TCAGAATT8070.11571634439593056No Hit
TAAGAAAT7750.11112784003326666No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)