FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282729

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282729
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1559594
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCTCG153245898.26005998997175No Hit
GTCTCTCA51230.3284829256845051No Hit
GTCTCACG30460.1953072402176464No Hit
GTCACTCG20910.1340733549885419RNA PCR Primer, Index 47 (100% over 8bp)
GACTCTCG19370.12419899025002662No Hit
GTCTCGCG18510.11868473461682975No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)