FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282738

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282738
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences934979
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTTACC91781298.16391598100064No Hit
ATCTTACA42210.4514539898757084No Hit
ATCATACC19340.2068495656052168No Hit
AACTTACC18560.19850713224575095No Hit
ATCTAACC14790.1581853710083328No Hit
ATATTACC12200.1304842140839527No Hit
ATCTTCCC10480.11208807898359213No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)