FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005282744

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282744
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences961457
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTTACC94469498.25650029070462No Hit
ATCTTACA44120.4588868768962106No Hit
ATCATACC19080.19844881258340208No Hit
AACTTACC17920.18638379043472564No Hit
ATCTAACC15180.1578853760490589No Hit
ATATTACC12370.12865889998200647No Hit
ATCTTCCC9780.10172061777073754No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)