FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282789

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282789
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences628966
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGACCATA61196697.29715119736201No Hit
AGCCCATA76831.2215286676863297No Hit
AGACCAAA21900.3481905222221869No Hit
AGACAATA9220.14658979976660105No Hit
AGACTATA8010.12735187593606012No Hit
ACACCATA6840.10874991652966932No Hit
AGACCATT6760.1074779876813691No Hit
AGAACATA6310.10032338790968032No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)