FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282796

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282796
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences642489
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGACCATA62336297.02298405108881No Hit
AGCCCATA91111.418078753099275No Hit
AGACCAAA24460.380706907044323No Hit
AGACAATA9260.1441269811623234No Hit
AGACTATA8520.13260927424438396No Hit
AGACCATT8050.1252939739046116No Hit
ACACCATA7370.11471013511515372No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)