FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005282819

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282819
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences879352
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATGAG86690598.58452587814664No Hit
CTTAAGAG16900.1921869740445237No Hit
CATATGAG14040.15966302459083506No Hit
CTTATGAA11160.1269116349311766No Hit
CTAATGAG10040.11417498339686497No Hit
CGTATGAG9320.10598713598195034No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)