FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005282822

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282822
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences879383
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATGAG86542498.41263704210793No Hit
CTTAAGAG17160.1951368175186466No Hit
CATATGAG14680.1669352261756254No Hit
CTTATGAA11730.1333889784087252No Hit
CGTATGAG10880.12372311040809295No Hit
CTAATGAG10060.11439839068983594No Hit
CTTATGAC10010.11382981021921051No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)