FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282836

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282836
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11767664
Sequences flagged as poor quality0
Sequence length76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGTACC37800.022.96712341
GTCCCTA28550.022.0682951
ATAGTAC39700.021.8701740
TTAATCA73950.020.3021568
ATTAATC67800.019.6144877
TCATTAC88300.019.46012712
AATAGTA48050.019.08977339
ATCATTA95350.018.75534611
CTATTAA58100.018.4318245
TATTAAT67300.018.3561956
GTACCAA46650.018.23326343
CCTATTA51100.018.217294
GTCCTAT65200.017.92949551
ATTACCT60500.017.81694214
GGTCCTA52950.017.25209850
TAATCAT90700.017.015959
TGCTAAT68100.016.9594670
AAATAGT61050.016.86002338
TACCAAG54700.016.76563644
CATGCTA73800.016.7402468
Produced by FastQC (version 0.11.5)