FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282849

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282849
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8179028
Sequences flagged as poor quality0
Sequence length76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTAATCA54550.018.2861258
GTCCTAT41250.017.22354151
CATGCTA44300.016.83053668
ATAGTAC30350.016.72059440
TCATTAC62450.016.70129412
ATTAATC50400.016.6669047
TAGTACC31350.016.52215241
GGTCCTA32450.016.5015450
GTCCCTA21700.016.1326181
ATGCTAA44950.015.8866869
TAATCAT64150.015.8771759
TCCTATC44900.015.35572252
TACCTCG35550.015.259294516
CCTATTA35600.014.847084
ATTACCT47350.014.63500714
ATCATTA74150.014.44390211
CATTACC49500.014.42400713
GTACCAA33350.014.06213943
TGTGGTG59700.013.9562011
CTATTAA45900.013.9559845
Produced by FastQC (version 0.11.5)