FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282869

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282869
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8106660
Sequences flagged as poor quality0
Sequence length76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCCCTA15800.015.9524441
TAGTACC19750.015.41708241
TGGGGTG52950.014.7431651
TCATTAC48000.014.21842312
ATAGTAC21700.014.1929640
TTAATCA48150.014.1012678
CGTGTTA22500.013.3773879
ATTAATC41200.013.2519597
GGTTGGG41000.013.1488781
GTCCTAT31600.012.95848251
ATCATTA55400.012.6350111
TAATCAT55450.012.5604999
ACACTCG49500.012.44408151
GTAACAC48150.012.3567848
TACCTCG23900.012.15453216
GGCCCGT24100.012.0562681
CGGGATT52300.012.04568715
TCCGTGT36000.011.95791157
GCGAGTG51650.011.92615324
GTACCAA26350.011.82114143
Produced by FastQC (version 0.11.5)