FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282872

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282872
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11337371
Sequences flagged as poor quality0
Sequence length76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATTAATC63750.017.0176017
TTAATCA77350.016.8758378
TCATTAC79700.016.55388312
TAGTACC33150.016.26317441
GGTCCGT59950.015.9947775
GTCCCTA24400.015.9229921
ATAGTAC34550.015.70723340
CATTACC62150.015.54120813
GTCCTAT46200.015.53018351
TAATCAT86700.015.4999029
ATCATTA89050.015.20876211
CCTATTA45200.015.0977774
TCCGTGT66800.014.7213187
AGACGGG71000.014.34369618
CGTGTTA39150.014.3022729
CAAGACG69600.014.22989516
TACCTCG35300.014.17704816
CTATTAA57900.014.1434095
ACGGGTC60200.014.12655320
AAGACGG70000.014.09864717
Produced by FastQC (version 0.11.5)