FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282912

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282912
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9019169
Sequences flagged as poor quality0
Sequence length76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCCCTA18800.015.0831551
TAGTACC23450.015.07389741
GTCCTAT34750.015.00655351
GGTCCTA26850.014.07753250
TCATTAC51350.013.97237112
CATGCTA37100.013.96344768
TTAATCA49150.013.9570648
ATTAATC46200.013.9391857
TGTGGTG66350.013.8764971
ATGCTAA39100.013.33902369
GGTGGTG147950.013.2980011
TGGGGTG58700.013.0608391
CATTACC47500.012.89432813
CCTATTA33150.012.7768424
ATAGTAC27700.012.634768540
TTACCTC37950.012.63457615
ATTACCT46350.012.61010314
ACCCCCC35300.012.49300838
TAATCAT56750.012.39635859
TCCTATC41150.012.33240152
Produced by FastQC (version 0.11.5)