FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282937

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282937
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11497459
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGACG26550.022.0148330
CGTACGT5900.021.94872719
CGCGGCA34550.019.75359732
TCGAACC32500.019.3842419
AAACCGC30800.019.3184811
ACCCGCG36000.019.24987825
CAAACCG33150.019.00473410
CGCGGAC30500.018.93430556
TCGGCCC52750.017.9151218
CGACCCG38450.017.84116223
AACCGCC33650.017.68229112
TCGCCGG35250.017.57420248
CAGTCCG39050.017.5686386
CGGGATT54000.017.56485615
CCCGTCG37500.017.3597444
CCCCGAC39400.017.32199920
GCGGCAC41300.017.20305433
CCGTCGC37200.017.12339845
AGTCCGC40900.017.0296757
ACACCGA36150.016.94318228
Produced by FastQC (version 0.11.5)