FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282953

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282953
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9095550
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGCA23250.024.08583532
TCGGCCC34950.022.032158
ACCCGCG25350.021.53829425
TCGCCGG23400.021.38860348
CCGTCGC23850.021.2786645
TCCCTCG28400.020.7054314
CGACCCG26800.020.50357223
CCCGTCG24700.020.404744
GCGGCAC28350.020.1231933
CAGTCCG28300.019.9131476
CGGCACC28500.019.77166734
CCCCGAC29850.019.22901520
AGTCCGC29400.019.04817
ACCGACG9250.018.540630
GACCCGC30700.018.01298724
CCCGACC30200.017.96323821
CCCCCGA32850.017.4729419
CGGGATT45150.017.36401615
TTCGCGA17550.017.35019756
TCGCGAT17550.017.35010157
Produced by FastQC (version 0.11.5)