FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282995

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282995
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11431969
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCCGCG21750.021.7238325
CCGTCGC21050.020.61773545
CCCGTCG21750.020.11509744
CGCGGCA24950.019.07771932
TCGGCCC37650.018.4993178
CGACCCG26600.018.02598223
TGCCGAC17600.017.49990564
AGTCCGC27200.017.4997527
TCGCCGG25300.017.43096448
CAGTCCG27750.017.2800166
CGGCACC28400.017.00665334
TCCCTCG31050.016.9087874
GTTCGCA31700.016.7823916
GCGGCAC29700.016.73362433
ATTGCCG19300.016.32115662
TACCTCG18100.015.66303516
GACCCGC30800.015.34062524
CGGGATT43650.015.31525715
TCGGCGA44600.015.14545921
GTGTTCG36350.014.73220914
Produced by FastQC (version 0.11.5)