FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005283003

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005283003
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10328010
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCCTCG30300.022.1795924
TCGGCCC38250.022.0524798
CCGTCGC22050.021.42823645
CCCGTCG22350.021.29720744
TCGCCGG22450.021.20254748
ACCCGCG26600.020.65757225
ACCGACG22850.020.52484530
TTCGCGA20000.020.12478456
CGCGGCA27000.019.8329332
AGTCCGC28100.019.6798847
CAGTCCG27250.019.6529736
TCGCGAT20600.019.53862657
CAAACCG25450.019.52865610
ATCGCGT21500.019.37169831
AAACCGC25700.018.93021611
CGGGATT45550.018.6717715
CGACCCG29950.018.23001123
AACCGCC26750.018.18707312
GCGTCAA23450.018.0594234
CGTCAAC23150.017.83989535
Produced by FastQC (version 0.11.5)