FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005284327

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005284327
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42177602
Sequences flagged as poor quality0
Sequence length35-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTTGTTAGGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTCTT875230.20751061191198114No Hit
GTTAGGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTCTCGTCTTGCTGTGTTATGCCCGCCTCTTC860900.20411307404342238No Hit
GTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTCTCGTCTTGCTGTGT774720.18368042829936135No Hit
GTTTGTTAGGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTC766070.18162957675972188No Hit
CCCAGATTTATTGAAAATAATACAGCACTACAGAAAAAATTCAAACAGGT660220.1565333183237871No Hit
GTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTCTCGTCTTGC655650.15544980485139956No Hit
GTTAAAAGTAAGAGACAGCTGAACCCTCGTGGAGCCATTCATACAGGTCC637740.15120347524735997No Hit
GTCTTGCTGTGTTATGCCCGCCTCTTCACGGGCAGGTCAATTTCACTGGT629700.14929725023248122No Hit
GGGTCTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTC564860.1339241619284093No Hit
CTCGTCTTGCTGTGTTATGCCCGCCTCTTCACGGGCAGGTCAATTTCACT562670.13340492899525203No Hit
GTTGATTTCATGAATGCGATTTCTGATATGGCGGCGGTCGGTTTCCAGTTTCGTTTCCCCGGGACCTCTTGCCCC560150.13280745548312584No Hit
GGGTTTGTTAGGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTCT558950.1325229442868753No Hit
CTGCAAGACTTCAGGCTCTTTCTCAGCCAGCAGCTCCCTGCTGAGCCTGG541400.12836196804171088No Hit
GTCTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGG529910.12563777333761175No Hit
CCCTGCTGAGCCTGGGGCATGGTGGGTCTTGGTCTTCTTCCTCTTCTTCGTCCTTTTTAATTCTGTCCACGTCA517150.12261247095081414No Hit
AAGTCAGGCAGTTCAAGATAACCTGAAGGAGTCGAATAACATCTATCCAG477770.11327576186052493No Hit
GGGTCTTCTCGTCTTGCTGTGTTATGCCCGCCTCTTCACGGGCAGGTCAATTTCACTGGTTAAAAGTAAGAGAC445670.10566508736082245No Hit
GGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTCTCGTCTTG429500.10183129899134617No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)